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Coding and Data Analysis in Biomedicine (BIOL90042)
Graduate courseworkPoints: 12.5Dual-Delivery (Parkville)
About this subject
Contact information
Semester 2
Administrative Contact
Kerry Ko
Subject Coordinators
Dr Jess Borger
Dr Brendan Ansell
Dr Meg Taylor
Overview
Availability | Semester 2 - Dual-Delivery |
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Fees | Look up fees |
In this subject, students will develop and demonstrate a comprehensive understanding of how to use computer code to analyse, visualise, model and make evidence-based decisions from large data sets. Through the development of a solid understanding of the theory and practice of data science for biomedical research, students will gain the necessary knowledge to identify and evaluate suitable data analysis tools for application in biomedical and clinical data sets via coding tutorials utilizing AI co-piloting models. Lectures will cover data visualization and visual communication, core statistical concepts including machine learning methods, and their application in the analysis of biomolecular data and health informatics.
This subject will be delivered through online lectures that delve into the principles of data analysis and AI, and its practical implementation in biomedical research. To enhance the learning experience, students will gain valuable practical training in the R software language that will teach them reproducible and transparent data science practices and responsible use of AI assistance whilst building foundational skills in data analysis and visualization, basic statistical analysis, report generation and process automation. Students will learn to perform analysis on datasets pertaining to bioinformatics and disease, and communicate findings through code-based (markdown) reports and oral presentations.
Intended learning outcomes
On completion of this subject, students should be able to:
- Develop code using an industry-standard data science platform (PositPBC RStudio) to analyse, visualise and summarise large biomedical data sets
- Combine self-composed and AI-generated code to analyse data in an appropriate and responsible way
- Apply best practice methods for organising data analysis pipelines to maximise reproducibility, transparency, clarity and transferability
- Critically evaluate published graphical results of analyses of large biomedical datasets
- Understand principles of machine learning methods and their application and evaluation.
- Apply parametric statistical frameworks to tackle biomedical data analysis problems
Generic skills
- Write software code to analyse quantitative data
- Visualise large datasets for effective communication of results
- Solve technical problems by drawing on a range of computer-based resources and methods
- Manage data science analysis workflows to ensure reproducible and transparent results
- Understand principals of classical statistical and AI-based analysis methods
Last updated: 15 January 2025